NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272434_1000052

Scaffold Ga0272434_1000052


Overview

Basic Information
Taxon OID3300031473 Open in IMG/M
Scaffold IDGa0272434_1000052 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)249100
Total Scaffold Genes338 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)211 (62.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.5Long. (o)159.59Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F013598Metagenome269Y
F025887Metagenome199Y
F061402Metagenome131Y
F065269Metagenome127Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272434_1000052326F065269N/AMIKSSESASIAHYELQNVRRESLLSQNQTASEEEDMNALLNTEKKNINMLLFDYKMIKISISIDLNA
Ga0272434_1000052328F025887N/AMSDNSFDFKLFTVDVILSSLEKIFRSFALIDTEVIDMTFIDESLMSELCKRFDIQSISLSKSKLIQSYDEISD
Ga0272434_1000052330F098340N/AMIEVVVYQTLIKNKKIKIFFLIISKINKALSSVEDFAKLNEMIFVMSLNELKKKLLIVYHNFLNVFDREKTTQLLLHQSYNHKIKLEDESQSS
Ga0272434_1000052334F061402N/AMTEFVNNNAISSSIKQSAFFLNKDFHFRMSFDLNSTEYEITQARIEVSKVKNIFEHMK
Ga0272434_10000524F000597GAGGVTFIKDMMKDVLISSTMSSSNNFFALKSLTTKCVLSSNEISYSLKSLIDIEAADYSFIDEIIAQIVCNQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLIIQDHMIETTFILII
Ga0272434_10000529F013598N/AMNFIIDLFDSYNYNAILTVICRLLKERHYISCIINDENITVEKTAEILLQ
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Institute for Fundamental Biomedical Research
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