Scaffold Ga0272434_1000017

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1000017
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 350738
• Total Scaffold Genes: 411
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 206 (50.12%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F021896	Metagenome	216	Y
F037508	Metagenome	167	Y
F041516	Metagenome	159	Y
F058565	Metagenome	134	Y
F069514	Metagenome	123	Y
F071806	Metagenome	121	Y
F094626	Metagenome	105	Y
F096306	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_1000017226	F041516	N/A	MIQKVIHIHEAYNLSLKDYKIIHEKENLSNIKRMLHMSKESIFVKDFNLHHFT
Ga0272434_1000017229	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCHHKYVTLKQLNKFFNSFYSEFTRIFSFLNYDDVILTNNIQNKINNHLQNALSVYFIKFSSLDKLKIFLQDVNNK
Ga0272434_1000017234	F013598	N/A	MNFIINLFNSSEYNVILTIICRLLKKRHYISCIIDDEDITVKKTAEMLIQ
Ga0272434_1000017243	F003820	N/A	MKLFNYLDYENCTLINNLQNKINNRLQDTLLIYLKDFITLHRLKSFLQNVNNRQRVNYQLRSERCMIIVKVIIASEKCITSLSAVTTSIIKYVKSIIFSISESVRLSIICYICKISDYLFKNCFQNKINTSAFYVFIFRLHEIVILKNKENEKMSCKNNKTKN
Ga0272434_1000017247	F071806	N/A	MKLQSQIIILNSVQLHLFSVISTSLQILTLMNLEIEEFNIKDVKSQLNQDILNLDEDSADIFIQTL
Ga0272434_1000017248	F021896	N/A	MMKNNFKSEDFLKNVKCNLTFLKSDKKYIFSDETSERDSYSTIVIDESSIKVREI
Ga0272434_1000017250	F096306	N/A	MFAMYNNCAVDSLINDNDSNKERSCRNNSELQASIILFNIVTLIATNVKIVFVESNDI
Ga0272434_1000017253	F006206	N/A	LCKLDEILSKENYFEKSFLIDAHFILQNQFFSLRLLINSDSVAHTLIHANLVNRVCEKLEIQSISLTKEKLIRDYDEKISKKIITHKILLNLIIENHKKLTVSMLIADIDHHEVILSKL
Ga0272434_1000017258	F008668	N/A	MSFNSDTTDYEITHERLKVRKADDIVIQMKELLSFNHQQLKKTKLIIKAQINKHK
Ga0272434_1000017259	F058565	AGAAG	MNCMNCSSADSKTIASNVDSLQENRDARSKHSHDDEENVANIIDLLIKISTLEKEKSKDH
Ga0272434_1000017292	F071806	N/A	MKLQSQIIILDSVQLHLFSIISASLQILTFMNLEIEEFNVENIKSQLNQDTLNLDEDSADILTQTL
Ga0272434_1000017312	F069514	GAG	MIEFVNNNALFSVIFLTSFFLNKDFHSHISFEFNVIEYESSHESLQMTKVENISEHMNKTLKFARKSLVKT
Ga0272434_1000017313	F094626	N/A	MKQVNKHKKEVNYEIESKMFLNERNIVTAKSFKKLNDKMLDSFINLNFINSSYKLKLSESMHVYDVFHSDLLRSVINDFLSDQKNEFLDLIMINNENE