Scaffold Ga0272434_1000016

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1000016
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 358594
• Total Scaffold Genes: 395
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 210 (53.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F071806	Metagenome	121	Y
F081945	Metagenome	113	Y
F094626	Metagenome	105	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_1000016129	F094626	N/A	MMKQINKHRKEINYKIKSKMFLNERNIITAKLFKKLDDKMLNSFKITDSVDFFYKLELSDTMHIYNVFHSEFLRFIVNDSLFDQKNESSRSIVINDEDE
Ga0272434_1000016137	F081945	N/A	MFNHSFIKKCSEEFQNYFSQIFDADSLKSLSVASFIHEDDKLFAEIIILFMFYEI
Ga0272434_1000016140	F071806	N/A	MMLQSQIIISDSVQLHLFSVFSLTLTLMNLEVEEFNVENIKFQLNQDILNLDEDSTDTFTQTL
Ga0272434_1000016145	F001951	N/A	MMIMTKLKFIDSSMNEKERDENTVETTVTKMIILKLRELLVNTKMLLTLMSETEKKTMK
Ga0272434_1000016146	F102181	N/A	MKEITIIVYIHALYQTLLLCIQSIFVSFILRYVEKLLESKSDDDSDRICKRMNDEKRLIIQDLCDDLSYHRERLRIQLYID