Scaffold Ga0272437_1116241

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0272437_1116241

Scaffold Ga0272437_1116241

Overview

Basic Information
Taxon OID	3300031472 Open in IMG/M
Scaffold ID	Ga0272437_1116241 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1725
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	159.06	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029944	Metagenome	186	Y
F036995	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272437_11162412	F036995	AGGAG	MTTYSRDDTLLTPFDGMLADGTPDRTVFEPTATETGEPAVTYYTREPDGYGLDDYRWQPLTDPAEIATIEGALAQGIDPPYEVWMDQAPAALTPGDLTPLGEGTPVYAWEQTGPAVGDGQLYEITDPVVRAAYEDAYPLQQGSVEIINPADFYDAAWATDAARATDPALYDAQIEDLVARGDTWLEVEHAEDGFALGRYDAGPIERDTNGWEPVRVGDGPDAPTGNVYLNEVTARQAAIAYNGADLAGMDLTLDPAPVTFDRDLTPALDL
Ga0272437_11162413	F029944	N/A	YTIDSQGRVLSVREATFPDPITARANAAPPVALRTLVAPLTWEPVQRLLAWGAREGLTAAELLDTCRAATRSTTRRRSAR

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