Scaffold Ga0272437_1023003

Overview

Basic Information

• Taxon OID: 3300031472
• Scaffold ID: Ga0272437_1023003
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6221
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 159.06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029944	Metagenome	186	Y
F036995	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272437_10230037	F029944	AGGAGG	MRTMDPGTGDALAYTVDRRGRVLCVWAATAVDAPVRADAAPPVALRTLVAPLTWEPVQRLLAWGAREGLTAAELLDSCRAATRPTTRRQRSAR
Ga0272437_10230038	F036995	AGGAG	MTQTVRDERDRAPYDGTRTSGPEGPAFTDEALPPDPALDREVTYYTREPDSFMPDDLRWQPITDPAEIATIEAALAQGIDPPYEVWMDQTPAALTPGDLTPIGEEATAYYAWEQTGPTVGDGQLYEVTDPVVTTAYAEAQPEPHAVEIVNPADYYDAAWAADAATLDPALYDARIDALIPTGATWLEVESVGSGFALGRYAAGPIERDTNGWEPVRVADGPDDGPTGNAYPDEATARQAAIAYNGADLAGTRLDLAPAPIALDRDLTPALDL