Scaffold Ga0272437_1001701

Overview

Basic Information

• Taxon OID: 3300031472
• Scaffold ID: Ga0272437_1001701
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32378
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (81.40%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 159.06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035137	Metagenome	172	Y
F075492	Metagenome	118	Y
F078022	Metagenome	116	Y
F094623	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272437_10017012	F035137	GAGG	MRGKWERKTDALWTYCPTRAVRPLGYVVQYRDTGRSGADWDATVTATRFDDDTIIAEHVSFDEARAALEQYAQQHIDYV
Ga0272437_100170126	F078022	GGAGG	MPDDDYITLASASKLAGLKSANSLHAAARTGRLKTVTMAAGPRSVLLTTRAWLQEYLDSQHRNT
Ga0272437_100170127	F075492	AGG	MTDHPDPTRATSGSSADDTTMDEILAVIAAEAPRGATAHQVAHAIGLGFDGTVVQDTLEELVEQGVLDRLGIGHGAVYTLNAMT
Ga0272437_10017013	F094623	GGAG	MTTASAIRWIERSPYLHEARVTTTDGRDIFAGYIAASPDEGVWRGYVGRGFVPLGSGPRTVMQRAVAQRIAELLQGDDVATKGCLDTK