NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1142541

Scaffold Ga0272439_1142541


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1142541 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1274
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F055319Metagenome138Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_11425411F055319N/AMIEVRVKKLRLVDKMICIQISEHDLAQKLNFSCKQQDFFIYIDDITVINIHDTQSEELLI
Ga0272439_11425412F001951N/AMMKLRFIDSSKDEKERDEDTVETTVTKVMIFELKKLLVNAEMLLTLMNKIMMKMK
Ga0272439_11425414F087980N/AHAVEQFTQSMIENSVEIFRAMQEFQNQVQQHDVIISSSFIVFNSSVYIELNSQSFAMIAQIITQILNNQFSLVVHFSANSVTVFIASRFKKLLDISEYEKNKDQLNA
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