Scaffold Ga0272439_1065147

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1065147
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2657
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057012	Metagenome	136	Y
F079402	Metagenome	115	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_10651471	F057012	N/A	MSDDSFDFKSFTVDVILNSLEKIFRSFALIDMRITDMTFIDESLMSKLCERFDIQSISLSKSKSIQLYDEIFDRKLITHALYTSIMIQEHKNEMMSLLITCLDQHKIIIENLXLKRNQMLINSANNRLISSLKIRTSKSVVSKASSQSAFHRFESNEICKRKRKNLNSIVTSIIILKRLMNQKSVNRFIESALIAKQS
Ga0272439_10651472	F104136	N/A	MIFSIRLAQIFSKSRSMNELXIXMNSSTSTCKSTFDEXNXMLNQFSRHQXLKSLALLLASXRXSLLRSQLQSLHERNSEYXTLILLERSCLKKNSASNARSQNIEHVTVSSQLRCTKSQRIRKTTCLRQSSDXKRYTRILLHQHVXRFIXFQVIHCXRHLE
Ga0272439_10651473	F079402	N/A	MRNKLKTNKNHFSIEEMKIAYVKSXVSETMIKHIALRMRNTITNSFLEAEEILSIINKMYDDLNQHHTTQRQFLKLY