NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1061333

Scaffold Ga0272439_1061333


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1061333 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2796
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F052973Metagenome141Y
F087978Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_10613332F052973N/AMFKDCARLEKDVFVTXKEDDVNEQDVDERKECXERKKVLSHIXVKSESDLN
Ga0272439_10613333F087978N/AMFSSKLLQSYSKDFLSEQHSESLRSITIEDDEHXEIDDILNFRRYQGRIQYKVKXKDLNKDDEXYYVDKEKFNDSEKVLNEFNKLYSNKSR
Ga0272439_10613334F008668N/AMNFDSDMTNYKTTYEQLEARKANDIVIQMKELLSFNRQQLKKTKLIIEVQINKHRRNVIYEVND
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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