Scaffold Ga0272439_1059862

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0272439_1059862

Scaffold Ga0272439_1059862

Overview

Basic Information
Taxon OID	3300031471 Open in IMG/M
Scaffold ID	Ga0272439_1059862 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2852
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F037508	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_10598623	F001253	GAGG	VTFIKDAMKNVLISSTMSSSDDLFVLKPLTIECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLSLIKLKPIRKFDDHYAKKLITHAIYSNLTVQDHMKRFASMLITRLSQHQMILEKT
Ga0272439_10598624	F037508	N/A	VTFRLGDDADKQIYAKRRIDAFSFYLSLTKLLKHLNEIYDDQNRNRKCRCEYNALKQSNKPFSFFYFKFTKIFSFLDYDNRTLMNDLQNKINNRLQNALSVCLIEFSSLDKLKTFLQRVNNKQRVNYQLRDEQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.