Scaffold Ga0272439_1037572

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1037572
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4101
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026450	Metagenome	197	Y
F049323	Metagenome	146	Y
F096305	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_10375721	F096305	N/A	MSRLFKEHFEASFFIVKDNNSFAEIITSSMTMKALKKRCKELKAKLQAREIISSSSIYSERFRFQKILDSLLFTDEKNSIXKNXYEKVQNKLEINVDLFSSERVKLSYIHFRLFNDAAEIIQLRRERDCFNLYKIIDELLKEL
Ga0272439_10375724	F049323	N/A	MMKEMNEKSAEQREKVLRMTRRVQQKCARFKLNIASXLALIKLIKVKSEFXLIQTCS
Ga0272439_10375725	F026450	N/A	MSRLFKECFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKAKLQARKIILLSSIYSERSRFQKILDSSLFIDEKNFIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEIIQSRHERDCFNSYKIVDELLKELSQLFNDSDKEVNFRRNYYNLIQE