NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1033992

Scaffold Ga0272439_1033992


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1033992 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4416
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018839Metagenome232Y
F037509Metagenome167Y
F070711Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_10339921F037509N/AMILISLFIQVHSIDNKMYIKKFMYLMINDIEKQNNIKKLIKSTRIYNCMIVKEFITQSIASVQID
Ga0272439_10339924F070711N/AVTFIKDAMKNVLISSTTSSLNDLFTLKSLTIECILFSNEINYLLKSLIDIEAADYSFINELIAQNVYDHL
Ga0272439_10339925F018839N/AMMMIMKVVTFNHLTSDLYVIVFIIAMFIESKDEVKLIKLNDFTILLNEDDFLLS
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