Scaffold Ga0272439_1025519

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1025519
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5430
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Amphiesmenoptera → Lepidoptera → Glossata → Neolepidoptera → Heteroneura → Ditrysia → Obtectomera → Papilionoidea → Nymphalidae → Danainae → Danaini → Danaina → Danaus → Danaus → Danaus plexippus → Danaus plexippus plexippus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041516	Metagenome	159	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_10255194	F041516	N/A	MTQKVIHIHEAYNSSFRDYEIIHEKENLSDIEKTLHMSRESILVEDFNLHHFT
Ga0272439_10255196	F104134	N/A	MSSLLSLRSDMIRFLXFVNTSAILYRICLINFFCISFISLLFIILIMISRFLQSNNELLLRRCFFVAISSLVTFAHDVIFVERRMFLCVCNCLLSSXTDVFSFCTFFAMNAFXFTXCFSSELSRKRXISFNAISFHEXSLLFSFFNVDIFISRSIILATFSSSSHEHFNLTFLFSCNESTSLTIVFKSALLQFMQFIIIQSSSRFTLSCL