Scaffold Ga0272439_1023599

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1023599
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5733
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019584	Metagenome	228	Y
F049323	Metagenome	146	Y
F059496	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_10235991	F059496	N/A	LIFKNSYNXILRIQKINTKASIYVMFRNCIKLEKDVFVTXKENDVNEQNVDERKEC
Ga0272439_10235994	F049323	N/A	MMKEINEESVEQQEEVLRMTXRVQQRCARFKLSIASXLALIKLIRVRSELXSIQTCS
Ga0272439_10235997	F019584	GAG	LIQLNTLKEIHFYLIQLNNDQXAIXEIKNKEVMIKVKTTKQIIFAEKSVKATHKIIEMKMINQSKSHDVVLTNVKENDLLIKSCFLYHKSDHTFKECSNKSFRINILNDEFDCSLNFNSESDSKN