NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1014524

Scaffold Ga0272439_1014524


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1014524 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8076
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007840Metagenome343Y
F059497Metagenome133Y
F078020Metagenome116Y
F096305Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0272439_10145241F059497GAGGMSIEDIDREIVYNTQCELNILDVTFIDASAQNLEDIKVKLSLKYQNFIDVFDRAQVNKLSSHRSYDHK
Ga0272439_10145242F078020N/AMRFFFDRLISAXKSAAFTLNIEKFFFKAVEADRXSTLKAELIEEFDDRDHFKCEALTDIEKTEMKASNXFEKTMTSFHISSSISFLFIQNFSNMTSXXFISAINIETVNFLXLSTVRLSRILXVMIFLISFPSYSLINFSLASHTSXISSFXHI
Ga0272439_10145245F096305N/AMPRFFKECFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREITSSSSIYSERSRSQKILDSSLFTDEKNSIXKNWYEKVQNKLEINVDLFSSERVRGQHKASHMSVR
Ga0272439_10145246F007840N/AMIDAIKRQNNTRKSIELTARLVELLDDLQLIKYTSFISINRISDKESSLIARESNRSRESINSQIKQQKQLHLLLSSIILRSISFF
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