Scaffold Ga0272439_1013718

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1013718
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8427
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F086377	Metagenome	110	Y
F089602	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_10137184	F086377	N/A	MIQRFXDQRQRISILDCDSVQISIVHAEAKFFFEFLDEENRDNRLKVTDLNEIFAQILIQITTKF
Ga0272439_10137187	F009580	AGTAG	MIYIQISERDLAQRLNFSCKQRDFFIYTDDVTVVDVHDTQSEELLIXAFFNDFAXMLQLAVVAQLSLVADFLDFRNDQSLILNDNNDEA
Ga0272439_10137188	F001951	N/A	MTKLRFIDSLRNEKERDKDTIEITVIEMIIFELKELLVDAETFLTLINETMMKIKRD
Ga0272439_10137189	F089602	N/A	MKDEXSSFIEISSEESDDLSEIIDIALQTVNQQEIFHQRMFFLLIKEIVVVSKVIHVLL