Scaffold Ga0272439_1002794

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1002794
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25786
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (10.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F003820	Metagenome	466	Y
F008735	Metagenome	328	Y
F086376	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_100279413	F001951	N/A	MMTMIKFRFIDSSRNKRERDKNTVETTITKMMIFEFKELLVDAEIFLTLMNETMMKMKXD
Ga0272439_100279415	F008735	N/A	MKEVMIIIHIHALYQTLLSCIQLIFVFLILKYVKKLLESKSSEDSDRVCKRVNNEKRLIIQDLCDDLSYHCKKLRIQLYIDXRIKNDEREXNDNIMLLNLILKFLHYAKDLDXIFNHTLSELFNSMLIIN
Ga0272439_100279417	F086376	N/A	LLELRKFDRVTSESLNQQFSTHTMTRSTESKSVSITRYNFQNVKRELLLSQNXAASEEEKGMNAMLNTEEENMNALLFVYEMIKISINEKLNAXITANETDDIIIFIKYMLHQHDIEIEIHNNMIQMLEDINKINITLKITQTRLQKENKDKNVIIHHLKAASSX
Ga0272439_100279427	F003820	N/A	MNNLQNKINNRLQNALSIYSENFTSLTRLRIFLQDVNNKQXVNYQLLSEHHTVIIKVTVISDKCITSLSVTTLIIDYVKLIISFIFKSVRSSIICYICKIFDHLFKNCSQNKIDTSASQTFILHLHEIIISKNKKNEKMSSFEDSKTKN