Scaffold Ga0272439_1002127

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1002127
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30796
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F028367	Metagenome	191	Y
F052973	Metagenome	141	Y
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_100212712	F028367	AGAAG	LCKLDEILLKENYFEKSFLIDTHLISQNXTFSLCSLIDSDSVIYMIIHSNLVNKVCEKLRIQSILLTKEKLIKDYDEKIFKKIITHKILFNLIIKSHRKLTVSMLIADINHYEVILNKLXMNKNEILLNMRNDVIVFSNQLNTSISIFSILLNSKHSSXSXSSSLSLIFQTKVFMMLKQLIQKESFSI
Ga0272439_10021272	F052973	N/A	MFRDCARLERNVFVTQEECDVNEQDVDERKECWERKRMLRHI
Ga0272439_100212731	F010214	GAG	MRVSVLFNYDASSLLCSSLTIFYTTMFRFNSXFKDERCFLCTRDAHDCNVRRAVFFYSMIVIHXAEKYVMKERHTRXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFSCE
Ga0272439_10021277	F083460	N/A	MKSSDSQAYSDALLELNASSIKYAMRCXLHKLLNHHLNHEESQGNSENDDENEAAEAV