Scaffold Ga0272439_1001614

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1001614
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36778
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (17.02%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F023763	Metagenome	208	Y
F039410	Metagenome	163	Y
F042102	Metagenome	158	Y
F055319	Metagenome	138	Y
F074203	Metagenome	119	Y
F086377	Metagenome	110	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_100161414	F086377	N/A	MIQRFXDQRQRILILDHDSVQISIVHAEAKFFFKFLDEENKDDHLRATDLNEIFAQIFIQIMMKF
Ga0272439_100161421	F042102	N/A	MLEDVNKINIMLKAAQTRLQKEMRNKNVIIHHLETASSRQSTSISEDCFLKLIKLLNSSLFEDSLQNVNNXLSRMQNKLKANKNHFSIKELKIIYIESQVSEAVIMHIASRMQDIFLNSFLEVEEVLSIINKMYNDLNHHHMTQQQYLKLYQNKIFFHEFXMKFQRFSAELEYNNEILLDDLQHKISSDLQXAMLNEXITNLNEFVNICMQVNVRLTELNAXLIIKVSAISAARSVTSTLSAQSTSLISAXKKLRRLNLDFIQKELFKKELCFKCKKSKHRAYDCFKTT
Ga0272439_100161424	F023763	N/A	MLRIECISLFKKIFXATCQSIQLIIDLVEMISDVIVESEQKFTSMSLMITQLLNSHEILKIFVIHDHLDKINKVFKLXSSFLESANNDHKFFIVNFVVTLSXVMLLQKVSDXMKNLILIVLKENVFKHIVXSINFYHNLVIXIIVIKNNLESEDFLKNVECNLIFLKSDKEYIFSDETSEXDSYSTIVIDESSIKVREI
Ga0272439_100161445	F074203	N/A	MSSHSLTEECFEEFRNRFSQTSDADSSKPRTKSSSAASFIHEDDESFTETIILLMFYEIXKTXSLVLDEETDXLYELNKQQEDEIKELKTRLQAKENTSSDFTYSKRSRSQKIPDSSLFTDEKNFTXKNXYEKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCINLYKIVDDLLKELAQLFDDSNKKVNFRRKYYNLVQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRFRFIXVD
Ga0272439_100161446	F039410	N/A	MLNKEMLMKENRNXVRSELETLTSSIQPXYARNKTFKTFKLHXVLYVISLSISVMNRAKTSVXFFFDXFSRVLNKAASMLRIENDSFLVVVETDRLSIIEVLVXMIEESEVDRDQLKCFELRRIEKIEIEVFNXFGKTMTSFRIFNNISFLFIQSLLNMTSXXLISAISIDTVNFLXLSMMRLSRILXVMIFLDIFSS
Ga0272439_100161447	F004755	N/A	DSDKKVNFRREYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLRFVXINQLVQSNSLKKIHFYLIHLNNDQRVIQEIKNKVNLIKRVNDLSKIIFHRAVVTQSVNHSKPDHLKSCDAILTNVKEADVLVEICFICHKSDHNSRECSDRPIRINAMNNEYNCFEFDFDSNFDSKN
Ga0272439_10016145	F094625	N/A	MKSSHNFLIDNERAVKQFTQSMIENSLEIFCIMQELQNQVXQHDVIILFLFIILSSSVYIELNSQFLAMIAQIIAQILNNQSSFVIHLSANSVTVLITSRFEKLLNIFKYERNKDQLNAXKQSLIQRMNMNDNHYFFHQVKIIYVESRLIIDKKTHNLMSQYXVNDFCIIFIFTD
Ga0272439_10016148	F055319	N/A	VKRLRLVDKMICIQISECDLAQKLNFSHEQXDFFIYTDDIIVIDIHDMQSEEFFIXAFFSDFA