Scaffold Ga0272439_1000953

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1000953
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52047
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (23.81%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F094620	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_10009532	F094620	N/A	MXQSLCKRLKIKVNLSTVYHSEIDDQSKQANQDVERELRIYCNYMQNDXAKXLSMMKFSDNFNTFSTILMISFYFNKDFHPXMSFNSDTTDYKMTRQRIEARKIDDIVTXMSELLIFDRQQLKKIKQITEAQMNKHRRDVIYEVDDQVXLTFENIKITRSCKNLKDKQLDFYSITVKVETFYRLQLSRSMKHIHSMFSSKCLRPSSNDSLSRQHSEFSKSLIIEENEEHXEVDDILNFRRYRERLQYKVKXIEVDRDDEXYYVDKGKFDDSKKVLNEFHKLYLNKSH
Ga0272439_100095322	F010214	GAG	VLFIYDALSLLCSSLMIFYTMMFRFDSRFKDERCFLCTCDARDCNVRKAAFSCSMIVIHCTEKYVMKERYTRXEDRVXLYXVTLSFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFSRRQIYDLMSSKEGELKLSQYISVIDESLLLQAL