Scaffold Ga0272439_1000947

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1000947
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52252
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (19.64%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F007840	Metagenome	343	Y
F008668	Metagenome	329	Y
F019584	Metagenome	228	Y
F058565	Metagenome	134	Y
F064254	Metagenome	128	Y
F094622	Metagenome	105	Y
F096305	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_100094714	F094622	N/A	MFISKQKVYSNDSDSKDDVTAIAMRMNXKLNKRLRRLTLVIIHHDELKELVAKAKHFANIATVNQECHEKIYKVYNDNQTSLKTVKAMILTKDQTRLQQVQIMHESIXF
Ga0272439_100094715	F058565	GAG	MNCTNCSNAGSKTIASNVDSSQENRDAELKHLHDDKENVANIIDLLIKISTLEKEKNKDHSXKEIALKLIRRL
Ga0272439_100094727	F008668	N/A	MISFYFNKEFHSXMSFNSNTTDYKITYKRLEARKVDDIIIQMKELLIFDHQQLKKMKQIIEAQINKHRRNVIYEVNDXI
Ga0272439_100094738	F094622	N/A	MLKQRVYLNDSNSRNDVTVIMMKMNXKLNKKLRKLTLIITHHDELKELVAKAKHLANIATVNQECHEKIYKVYNDNQTSLKTVKAMISTKDQTRLQQVQIMHESI
Ga0272439_100094739	F064254	N/A	MXKLYELVSFLLSFSFIXFFNDVTVXNXFSMLVKSIIXMITVIMLMISRSFLKFVMFSLHCIIFHSIFHLEHVNRMCLINIQSLSHLHVIVATLSTHLSCKNXLKSIFLMHSCINNALXNFAXFLCSYRCXCVIFDIRYQKXVELNFSFQTILHVCLICFCMSINLVITSMYXCSVSNKDKSCASSIILFITLFLNISACLVTQCNFNMTS
Ga0272439_100094750	F000597	N/A	MKKMLISSTMSMSDDSFASESLTTKCVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHMIDTAFMLITRLN
Ga0272439_100094754	F007840	N/A	MIDAIERQNNTRKFIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNQSRESINSQIKQQKRLHLLLLSIALRSISFF
Ga0272439_100094755	F096305	N/A	MSRLFKERFEASFFIVEDNDLFAEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDKKNSIXENXYEKVQNKLEINVDLFSSERVKLSYVHSRLFDDATEI
Ga0272439_100094756	F019584	GAG	MIKAQTTKQIIFVEESVKATCRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFDHSSNFDSESDSKN