Scaffold Ga0272439_1000880

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1000880
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54832
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (18.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F010214	Metagenome	306	Y
F021216	Metagenome	219	Y
F023763	Metagenome	208	Y
F038008	Metagenome	166	Y
F044227	Metagenome	154	Y
F046102	Metagenome	151	Y
F064252	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_100088025	F021216	N/A	MKSRMKSNLMRREHHELKKALRNHERSDNDHLNDILNEHTESISSCDVIKESDEREKK
Ga0272439_100088026	F038008	N/A	MKXSHLYMMILXSESLRIVIVANKKMSINQHHLDTFALKQRVYLNDNDSKEDVTTTAMRINXELNKRLRKLTLIITHHEELKELIVRMKRLADVVTENQECHEKIYKVYSDSQTSLKTVKAMISTKDQTCLQQVQITHENIQS
Ga0272439_100088030	F010214	GAG	VSVLFIYDASSLLCSSLTVFYTTMSRFDLRFKDERCFLCIRDARDCNVRRAAFSCSMIVIHCAEKYVMKERRTRXEGRVXLYXVTLFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALNFPRRQIYDLTSSKEDELKLFQYISVINESLLLRAL
Ga0272439_100088031	F046102	N/A	MSSSDDFFASKSLTIECVLFRNEISYSLKSLIDIEAADYSFIDELIAQNVYDHLQIESLSLIKLKSIREFNDYYVKKLITHAIYLNLTVQDYMKRFVFMLITRLDQHQMILEKTXMNKIKMIIDMKDNRLQFSSFEAHIKASIKAHSTVLSSKKIVIE
Ga0272439_10008804	F000597	N/A	MSMSDDSFTSESLTTECVLSNNEISYSLKSLIDIKAADYSFIDEVIVQIVYDQLQIESLTLIKAKSIQEFNDYYAKKLITHVIYLNLTVQDHTIDTASMLIT
Ga0272439_100088045	F023763	N/A	MNFQNCLILILMSRIECILLLRKIFXATCQSIQLIIDLVKMISDAIVEFKQKFTSMSLMMTQLLNXHEILKIFMICDHLNKINKIFELXSSFLESANNDYEFFVIDFVVTLN
Ga0272439_100088047	F044227	N/A	MQLQIKSSDDEECTHALLELIASAIKNATRCXLLELSNNHHHHEEFQSSSKDDDENKALEAI
Ga0272439_10008808	F064252	AGG	MIIDTLEETNKRYQEKMLNLKNKLKEVLHSADQSRSRQSTESQVSTKSLSRQSIKNHTQRKLFTLFNNDHHKSFKFLNSSVFIDEDESTXDSXRIKINDKLQTNVDHFVNETICIVYVISRLEGDAAEHIFAXCHHDALHSYISIYKLLKHLEEIYEDQNKNXKCHHEYNALRQADKFFNVFYFNFMKLFSYLEYNDRTLMNNLQNKINNCLQNALSICLKDFIILHCLKSFLQSMNNRQXVNYQLRSERCTIIIKVIITSEKRVTSLSAVMTSIIEYVKSTIFSTSESVRSSIVCYICKISDHLFKNCFQNKINTSAFHVFISCLHEIIISKNKENEKMTFFFKNNEAKN