Scaffold Ga0272439_1000856

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1000856
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55855
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (38.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042102	Metagenome	158	Y
F057012	Metagenome	136	Y
F061400	Metagenome	131	Y
F061402	Metagenome	131	Y
F065268	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_100085624	F042102	AGAAG	LLFDHEMIKISISTELNAXISTHEADDIVVFIKYICQQHDIEIEIYNDMIQMLEDVNNINITLKAVQTRLQKEMRDKNMIIHHLETALSRQSTLISEDHFLKLIKLLNSSLFEDSSQNVNNXLSRMXNKLKTNKNHFSIEELKIVYIESRVSKATIKHIASRMQNIFLNSFLEVEEVLSMINKMYDDLNHHHTTQXQYLKLYQNKIFFHEFXMKFQRFSAELEYNNETLLNDLQHKISSDLQQATLNEQITNLNEFINICMQVDVRLTELNAXSVVEVSVTQATHSVSSTLTVQFTSSVS
Ga0272439_100085633	F057012	N/A	MSDDLFDFKSFIVDIILNSLEKIFRFLALINTEVTDMTFIDESLMSELCERFDIQSISLSKSKLIXSYDETSNXKLITHALYTLIMIQEHKNEMMFLLITCLNQHKIIIENLXLKRNQILVDFANDRLISSLKIRTLKSVVSKASSQSAFHKPESNKTCKMKQKNLNLIITSIIILKRLLNQKSVNRFIEFALITKQST
Ga0272439_10008564	F061402	N/A	MQDDXFVXLSMTEFVDNNAISLSIEQLTFFLNKNFHSCMSFNSNSTEYEITXTRIEANKAENIFEHMK
Ga0272439_100085640	F061400	N/A	MLLKYYNCIRNLNSEKTIIEAXNIYRREEDEDNAINESNDSFKTDLQNVLHSINV
Ga0272439_10008567	F057012	N/A	MTRSMLIFNIIDTEVIDITFINESLMSELCEHFDIQSISLSKSKLIXLYDEISDXKLITHALYTSIMIQEHKNKMMFLLITRLDQHKIIIENLXLKRNQILINSANNRLIFSLNIQTSKSVVSKTSSQAAFHKSESSEICKMKXKNLNLMIMLTIILKRLTNKKLVNQFIESV
Ga0272439_10008568	F042102	N/A	MLKITQTRLQKENRNKNVIIHHLKAASSXQSTSISEDQSLKSIKLLNSLLFKDSSQNVNNXLSRMRNKLKANKNHFSIEELKIVYIESXVSEAAIKHIASXMRNTSLNLFLEVKEVLLIINKMYDNLNHCHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELEYNNEILLDNFQHKISSDLQRATLNKXIINLNEFIDICMQVNVRLTELNAQSVVKALMTQAAQSVSSTLTARLTSSISLXKKFRRSNLDSIQKELFKKELCFKYKKLKHKAYDCLKMTQVHKIAANLKNNLLLSK
Ga0272439_10008569	F065268	AGAAG	VSIAHYDLQNARRESLLSQNXTASEEEDTNALSNTEEENMNALLFDHKMIKISISTKLNAXVNTYKADDIVIFIKYIC