Scaffold Ga0272439_1000439

Overview

Basic Information

• Taxon OID: 3300031471
• Scaffold ID: Ga0272439_1000439
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83077
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (20.78%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F017767	Metagenome	238	Y
F057010	Metagenome	136	N
F087979	Metagenome	109	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272439_100043910	F010214	N/A	MSVLFIYDTLSLLCSSLMIFYTMMFXFNSXFKDKRHFLCTHDAHDCNIHRAVFSYSMIIIHCIKKYVMKERCIXXEDKVXLYXVTLFFFXFDLCHVDVEXIVSINMQLQSFNVXLXLMKENAFXLFSXTFNFSCR
Ga0272439_100043917	F017767	N/A	MSNDSFASESLTTECVLSNNEINYSLKSLIDIEAADYSFIDEVIAQIVCD
Ga0272439_10004392	F010214	GAG	MKVSVLFDYDASSLLCSSLTIFYTTMFXFDSQFEDERRFLCTRNARDCNVRRAVFFYSMIIIHXAEKYVMKERCTRXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALNFPRE
Ga0272439_100043944	F010214	N/A	MKVSVLFDYDASSLLCSSLTIFYTTMFRFDSRFEDERRFLCIHDAHDYNVRRAVFSYSMIVIHXAEKYVMKERHTRXEDRVXLYXVTLFFSXFDLCHIDVEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALDFSRE
Ga0272439_100043946	F100079	N/A	MFRYRHFIHKXYADEKTSLKEERYKRVSKEXSNYVVXLKV
Ga0272439_100043961	F087979	N/A	VKEKNENSTFIYMNXAKLRLNNSFIDLRLQKFVYIIEIIKTELLKLN
Ga0272439_100043970	F010214	N/A	MRVSVLFDYDASSLLCSSLMIFYTTMFRFDFXFKDERCFLCTCDAHDCNVRRAVFFYSMIIIHXAEKYVIKERCTXXEDRVXLYXVILFFSXFDLCHVDIEXIVSIDVQSQSFDVXLXSMKENAFXSFSXALNFPRE
Ga0272439_100043974	F057010	N/A	MTMKALKKRCEELKARLQAKKIISSSSIYSERSRSQKIPDSSLFTDEKNSIXKNWYEKVQNKLEINVDLFSSERVKLSYVHFRLFNDAAEITQSKRERDCFNSYKIIDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLNYQEKQLIIDLKNKINSRLRFAXVTQLIQLSTLKEIRFYLIQLNNDQRAIQEIKNREAMIKAXTTKQVIYAEKSVKATRRIIEMKMTDQSKPRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDKFDHSLNFDSESDSKN