NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272439_1000286

Scaffold Ga0272439_1000286


Overview

Basic Information
Taxon OID3300031471 Open in IMG/M
Scaffold IDGa0272439_1000286 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105256
Total Scaffold Genes120 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (57.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F017941Metagenome237Y
F021216Metagenome219Y
F044226Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0272439_100028613F000597N/AMSNDSFASESLTTECVLSSNEISYSLKLLINIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLIIHVIYLNLTVQDYTIDTVFMLITQLDQHQMILKKT
Ga0272439_100028614F003820N/AMKLFSYLEYDDHTLMNDLQNKINNQLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKHAATSLSAVTTSIIEYVKSTIFSTSESVRLSIVCYICKISDHLFKNCS
Ga0272439_100028634F021216N/AMFQMKSRMKSNAMRREHHELEKALRNYERSNDDYSNNIFNEHIESISSCDVIKESDKREK
Ga0272439_100028635F044226GAGMMKFSENFNIFFIISMISFYFNKNFHSRMSFNSDTTDYEIIHEHLEARKVNDIII
Ga0272439_10002865F000597N/AVTFIKDVMKDVLISSMMSMLNDFLTSESLTIECVLSNNKISYSLKLLIDIKAADYSFINEVITQIVYDQLQIKFLTLIKAKLIQEFNDYYAKKLITYVIYLNLMIQNHTVNIAFMLITQLKQHQMILEKI
Ga0272439_10002869F017941N/AMKIADLEKNNDQSIYRQVLDANEIDENCTLLRKAIARDEAQYEGIKLKNC
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Institute for Fundamental Biomedical Research
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