Scaffold Ga0272432_1006122

Overview

Basic Information

• Taxon OID: 3300031470
• Scaffold ID: Ga0272432_1006122
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11819
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 160.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028367	Metagenome	191	Y
F033266	Metagenome	177	Y
F080690	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272432_100612210	F080690	N/A	MIENSVEIFHVMQELQNQVRQHDVIISFLFIIFSSSIYIKLNSQFLAMIAQIIAQILNNQSLIIIHFFANSVAVFIVSKFKKLLNISEYEKNKDQLNAXKQSLIQCMNVNNDHYFFHXVKIIYIESRLIIDKKIHNLMNQYRVNYLCIIFIFADXXHKLHHCCDNSFKTEDAHLYFRKTLKQDMNNFVDYYNLFYQKKEYSLMKDFSLIDCLKCNVNYFT
Ga0272432_10061223	F028367	GAG	LCKLDEILLKENYFEKLFLIDAHLISQNQSFSLRFLINSDSIVYTIIHSNLVNKVCEKLKIQSISLAKEKLIRDYDEKIFKKIITHKILFNLIIESHKKLTVSMLITDINHHEVILNKLXMNKNEILLNIQNDVIVFSNQLNTSISIFSILFNSKHSS
Ga0272432_10061224	F033266	N/A	MFSRSSTEKRFEEFXNHFSQISDADSLKSRTKSSSAASFIHEDDESFAETIISLVFYEIXKAQSLALNEETDQLYELNKQQEDEIKELKTRLQAKENTSFDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNE