NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1001978

Scaffold Ga0272432_1001978


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1001978 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25489
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021684Metagenome217Y
F054461Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10019782F021684N/AMYNKHSKTIIEASEQDEVYIIKYIVKSLNEFALISIIYISYSEIIFSTAALNASLYV
Ga0272432_10019784F054461N/AVKSLNCVVYEYILIKKVIEEVKRMLTAVNVSRVFTQSLTLILFYFIEITKTSFLNILT
Ga0272432_10019785F021684N/AMYNKHSKIIIKALKQDKVYIIKYIIKSLNEFVLISVIYILHLKTVFFAAALNVSLYV
Ga0272432_10019787F054461N/AMKSLNYVVYEHIFVKRVTEEVERMLTAINMNRVFTQSLTLILFYFIKAAKTSLLNTFTQ
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