Scaffold Ga0272432_1001707

Overview

Basic Information

• Taxon OID: 3300031470
• Scaffold ID: Ga0272432_1001707
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28308
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (29.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 160.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F028368	Metagenome	191	Y
F033266	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272432_10017072	F033266	N/A	MSSHSFTEECFKEFQNHFSQISDADSTKSSSAVSFIHEDDESFAEMIISLMFYEIXKTXSLALDEETDXLYELDR
Ga0272432_10017073	F004755	GAG	LSYIHSRLFDDAAEITQTRCERDCINLYRIVDDLLKELAQLFNDSNKKVNFRREYYNLIQEFKKFSEFYTQFQRLSFYLDYHEKQLIADLKDKIHSHLXFIXVDQLVQSNSLKEIHFYLIHLNNDQRVIREIKNKIKCINDLSKTIFHKATVITQSVDHLKSDQLKSRDAILTSVKEADILVESCFICHKFDHSSKECFNRSTRINAVNNEYDRFDFNSNFDSKN
Ga0272432_10017074	F028368	N/A	LKENYFEKSFLIDAHFISQNQSFSLRSLIDSDSVVYTIIHFNLVDKVCKKLRIQSISLTKEKLIKDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMXNDVIVFSNQLNTSISIFLISLNSKHSSXSRSTSSSLITQTKIFIMLKXFIRKESFLIQSINAALFKTLLNHLKKNKIKVFALFMININKEIAYNTQCDLNTLNISSINKTT
Ga0272432_10017077	F002432	GAG	MIKFSNNFNIFLITSMILFYFNKEFHSRMSFNSNTTDYETTCEXLEARKADDIVIQMKELLNFNHQQLKKTKLIIKVQMNKHKXNVIYEVNDXVXLSFRNIKITRLCKDLKDKQLDLYQITVKVSIFYHLHLSVSMKHLHSMFISKLLXSCSEDSLSKQHLESLRLITIENDKHXKIDDILNFRRYQDQIQYKVKXTDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSNKSR