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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031470 Open in IMG/M |
| Scaffold ID | Ga0272432_1001350 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33326 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (18.75%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 160.7 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020121 | Metagenome | 225 | Y |
| F021026 | Metagenome | 220 | Y |
| F075493 | Metagenome | 118 | Y |
| F076668 | Metagenome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272432_100135017 | F021026 | N/A | MIIFCILRQAQSRVLTFALIDSEVFAYVFMNKFFTQQHHLFLHQLTHSRRLQEFDDQVTLIDDIIHVIEITMILDEHIERLFFYVIELSQYLIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHCCQTLVKIYDLNQQE |
| Ga0272432_100135020 | F020121 | GAG | MKKLTEHLRDEMLIAQIIYEFNVNLSCRSCSRYFIEDEVXLNACNLSIAHLAVKLDDRNIDFFKIKRVFKNNFLIIELNLSAFMKIHSIFHVILLSHIASNSLSNQRQKSQELIVIKNDERFXYVNNILNFKRDRCYNSFLLKYYINXKDHFSTXESFHLLNNCEQTLNEYHLVNSVAEESHVLSCVMSQCQCQEL |
| Ga0272432_100135023 | F075493 | N/A | MQSVXAMHEYMLHRLITLFAVTSQTIHVXNVSKVQINIQIYALNSDVYCKNAFCFLKIIMHLYHLIAQMQSLCXNYVNICNVFSVLFSSLISLIFVILHYCNAIACXNHCEEENASFASQLYLRIFLNKDIQKYYFLDDEXVRNDAINFRQMNMY |
| Ga0272432_10013509 | F076668 | N/A | MTCLLLTSXFLARSSARKKSMNSIDSYAIKETTSVFESTKKIMHMSNALLTDMLMLCNRKLKDATNQKXLHCARFENIRSQSKISFSKXSSNDLXERLCTTVLAKICYHMTIAFSALSXVLFKKSLKTLCAFLXKVSALLFRIITLVVEFSLTFCSMQTSTXQQFMSNASSFKIEIXDL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |