Scaffold Ga0272432_1001130

Overview

Basic Information

• Taxon OID: 3300031470
• Scaffold ID: Ga0272432_1001130
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37724
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 160.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F009580	Metagenome	315	Y
F089602	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272432_100113026	F001253	GAGG	VTFIKGAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLPLIKLKSIRGFDDHYAKKLITHAIYSNLTVQDHMKRFASMLITRLDHQQKHECT
Ga0272432_10011304	F089602	N/A	MKNKXLSFIKKLSEENDDLSEIIDIALQTINQXEIFHQRTFFLLIEKIVVVNKAIHVLLQSFMKI
Ga0272432_10011306	F009580	N/A	MIEVKVKRLKLIDKMIYIQISERDLAQKLNFSCKQXDFFIYTDNIIVVNIHDMQSEELLIXAFFNDFAXMLQFAVVAQLSLVANFLDFRNDQNLILNDDNDKA