Scaffold Ga0272432_1001030

Overview

Basic Information

• Taxon OID: 3300031470
• Scaffold ID: Ga0272432_1001030
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40179
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 160.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021684	Metagenome	217	Y
F034416	Metagenome	174	Y
F059495	Metagenome	133	Y
F096304	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272432_100103019	F034416	N/A	MFILAVKVIERIEERFVLTIIINNDEKDSSINELNSTAIKLCIELLSDHYFSDNDLYNDSDYKNNINFRLYNYD
Ga0272432_100103027	F021684	N/A	MYDKYSKTIIEASEQDKVYIVKYIVKSLNKFTLISTVYTLHSETVFLVIALDASLYV
Ga0272432_10010305	F059495	N/A	MMFKDEKFLNNNFINEFVLNDLIDDNEDDKKNIKFINDKESSKKDNK
Ga0272432_10010306	F096304	N/A	MKTVLGREKTAVVERIFRKTFKKEKIDVDKKKKENNVIDIEKNTKAFKLAHYXKSGSKLNFNI
Ga0272432_10010307	F059495	N/A	MMFKDQKFLNNNFINKFIFDDLINDDEDDKKNIEFISDEESSKNNNK