Scaffold Ga0272432_1000845

Overview

Basic Information

• Taxon OID: 3300031470
• Scaffold ID: Ga0272432_1000845
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47021
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (35.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 160.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F019260	Metagenome	230	Y
F038009	Metagenome	166	Y
F055319	Metagenome	138	Y
F089602	Metagenome	108	Y
F094625	Metagenome	105	Y
F104132	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272432_100084521	F104132	AGAAG	MNEILNSRVKNSQLEYLIKXTEIEENSXIKFANVMNVIEVMNVYHARNLDRSSKNSXIAYVQESSDSEYESEN
Ga0272432_100084523	F019260	N/A	MSQFKNISNILSSTSLVSINEFITVVQFXTHVNNALEAXYTFLIELQTWFNDIITQYINXVSVCQQEHEQTQIELKQSQINNEILSEMIQELKSMSRINIKSEKYSNSELYIEERENKLNQFIFKLISKLKLNANRYLTLESRLLYEYSRLSKNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMQNRIFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYLVKYATLSTGSKATISNSKNLMNLSIVNMKKRDSLILKKHQHRMINHLCLYCDKSKHQTAICNSKLKIQLRVISLFVLAISIDNLAFDTSLALRKV
Ga0272432_100084531	F038009	N/A	MNSMIKASSSQLNYVKLYKRSIELICLKDNRSSRKKIILTLDFXXVFFLNDLKNTIRSFLFQMRNKIEXDLFLMNELSISXLLMSEREVILLLVSRXKTELLLASELRTELLLVSELKTELLLSSKXKTRLLLASELKTELLLSSEXETRLLLASELSAELLFVSNL
Ga0272432_100084534	F055319	AGCAG	MIEVRMKRLKLVNKMIYIQISERDLVQRLNFSCKQRDFFIYIDDIIVVDIHDMQSEKLLIXAFFNDFA
Ga0272432_100084535	F001951	N/A	MTKLKFIDSLRNERERDEDIVKITVTKMMIFKFKELLIDAKMLLTLINKMMMKTKQD
Ga0272432_100084536	F089602	N/A	MKDEXSSFIEISSEENDDLSEIINITLQTVNQXKIFHQRMFFLLIEEIVVVDEVIHVLLQNFAKI
Ga0272432_100084537	F094625	N/A	MKSSYNFSIDNERAVEQFAQSMIENSVEIFRAMQELQNQVQQHDVIISFLFIIFSSSIYIKLNSQFLVMIAQIITQILNNQSLLIIHLSANSVAVFITSRFKKLLDIFKYEKNKDXLNAXKQSLIQRINMNDDHYFFHXVKIIYVKSRLIIDKKTHNLMSQYXVNDLCIIFIFAD