Scaffold Ga0272432_1000624

Overview

Basic Information

• Taxon OID: 3300031470
• Scaffold ID: Ga0272432_1000624
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58295
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (10.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 160.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F008115	Metagenome	338	Y
F008735	Metagenome	328	Y
F038009	Metagenome	166	Y
F038484	Metagenome	165	Y
F057012	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272432_100062411	F008735	N/A	VNLLIYDESXLDINDLDSMKEIMIIVHIHALYQTLLSCIQLIFVLLIFRYVKKLLESRSNEDSDRICKRVNDEKRLIVQNLCNNLSYHCKRLRIQFYINXRTENDEXERNDNIMLSNLILKLLHYAKDLNXIFDHTLSKLFNSTLIINQEIVRXLYLSERITRXDFNVXKRCRKCRSFIMSKTELD
Ga0272432_100062414	F038009	GAG	MIKALSFQLNYVKLYKKSIELICLKNNRSSKEERILTLDFXXVFFLNDLKNTTRSFLFQMKDKIEXSLFLVNELNISXLLISEQRVILLLVSRXETELILASELRTELLFVSELKTELLLSNEXKTKLLLASELKTELLLLNE
Ga0272432_100062427	F057012	N/A	VTESDILIFCFINMSDDLFDFKSFTVDIILSSLEKIFRSFALINTEVIDMTFIDESLMSELCERFDIQSISLSKSKSIQSYDEISDRKSITHALYTSIMIQEHKNEMMSLLITCLDQHKIIIENLXLKRNQILIDSANDRLISSLKIQTSKSIVSKASSQSAFHRFESSEICKMKQKNLNSMIMLTIILKRLTNLKLVNQFIESVRFIESVLIQKQST
Ga0272432_10006245	F008115	N/A	MNFITELSLSEDYNVICIIICYLIKEHHYVFCHXEDDDISIEEMIXIMLXNVYRLHDLLSSIVSNRNSQFISTMXKSLCKXLRITASLFTVYHSEIDDQLKXVNQDVKRELRIYCNYMQNDXVKXISMMKFSDNFNIFSITSMIFFYFNKEFHSXMSFDSDTTDYETTCERLKARKADDIVIQMKKLLNFDHQQLKKTKLIIEVQINKHKXDIIYEVNDXVXLSFRNVKTTRLCKDLKDKQLNLYQITVKMSIFYHFHLSVSMKHLHSMFSSKLLQSYSEDFLSEQHSESLRSITIEDDEHXKIDDILNFRRYRDXIQYKVKXTDLDRNDEXYYVDKEKFDDSEEVLNEFHKLYSNKSR
Ga0272432_100062450	F000597	N/A	MSMSNDFFASESLTTECVLSSNEISYLLKLLIDTEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFDNHYAKKLITHVIYSNLMIQDHTVNIASMLITQLEQHQMILGKTXMNKTDLVIDMQIDSL
Ga0272432_100062451	F005901	N/A	MMSRLEDDAAKHIFAXCCFDSSNSFTLIYELFDHLKEIYDELNKNQKSRREYNALKQADKSFNIFYFNFMKLFSYLDYDDRILMNDFQNKINNRLQNVLSVCSENFTSLSRIKKFLQDVNNKQRVNYQLRSERCTVIVKVIVVPDKCATSLSVMTSIINYVRSTIFSISESARSSIICYICKISNHLFKNCSQNKIDISTSXAFTLRLHEIVIFENKENKKMSSFKNSEAKN
Ga0272432_10006248	F038484	N/A	MRLILMCITRMLSAFXKSSRIFIILLLRCDLCAEILLTSATRSLYFSHRXFHXSLXYCIIAMLLLIEIVVKKRMHHLHLNCIFASSXMKTFRSIIFLITSEREIMQLTFVKRARISLYAYLISYVQLLTQLCNVILFCNIFRXTCSELMYVSVFKVLMLTLLNTSATXCKVXFXNVSSLHSLLNSSSFLSRXCQIDALNAISDLTTAEYTCLTFVKITSHVKTSRXLSVSILVTXFIFIYQRCAFHCSFMFSCIFKTHTFDFNLIIEFSIYMLVIMLNLFDFLVKCVSSYLSDANVMLXMXTHFTQMSCALLNILQISSVNLS