Scaffold Ga0272432_1000596

Overview

Basic Information

• Taxon OID: 3300031470
• Scaffold ID: Ga0272432_1000596
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60039
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (22.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 160.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F070710	Metagenome	122	Y
F089602	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272432_100059634	F089602	N/A	MKDEXLSFIEVLSEKNDDLSEIINIMLQTVNQXEIFHQRMFFLLIEEIVVVDKVIHVLL
Ga0272432_100059643	F009580	AGCAG	MIEVKVKRLRLVNKMICIQIFERDLAQKLNFSYEQQDFFIYIDDVTVVNVYNIQSEELFIXAFFNDFAXMLQLAIVLQLSLVVNFLNFRNNQSLILNNDNDEA
Ga0272432_100059653	F070710	AGCAG	MLNQKVQKTFSDQKHTKSLLNIKSTTAINNFMIKQFFLQILQYNIRKSLKIQESFLIDRKVRKFNIIIIQKQDHNNNSLQSFNSIHNFFHLVKNSSSQSRTCIYINKHLKFDQXIVKTVESDICLIRILTRNADDEMQTLRLLNVYNLCLLFTTFTEKSSIISCLNELLKNDCKQLIIKDFNLHHFHXEERRCFTHHTMTDILLNVIINARLKLLLKSDIITHKAHNQFTMINLVFNSEKIKFMICKCKIQINLHQRLNHLLIITKLCL