NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000415

Scaffold Ga0272432_1000415


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000415 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)75488
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (43.08%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034416Metagenome174Y
F052972Metagenome141Y
F054461Metagenome139Y
F059495Metagenome133Y
F064251Metagenome128Y
F096304Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100041519F034416N/AMFILAAEVIKRIKEKSVLTMIINNDEKNLSVNELNSTVTKICTELLSDHYFNDNDLYNDSDYENNINFRFCDHN
Ga0272432_100041522F059495N/AMMSEDEKSLNDDFINEFVLDDLINDNEDDKKNVEFISDEESNEKNSK
Ga0272432_100041524F096304N/AMIHIKKTLRHSAMKTVLNEEKTATAERTFRKTFKKEKTDIDKKRKENNAADTEEDTEAFKLAHH
Ga0272432_100041526F064251N/AMNTCAICLFSEFNVSMLTAVNLNVVKLIAEALLSKIEEDSVSLLC
Ga0272432_100041527F054461N/AVKSLNCVVYEHIFVERVIEKVERMLTTVNVSRVFTQLLTLILFYFIEAARTLLLNTDSA
Ga0272432_100041532F064251AGAAGMSTCAIYLFSESNVSMLTAINLNVIKLIAKALLSKTEEDSVNLLC
Ga0272432_100041560F052972N/AMNSLKIDNYTAINRSHHSESLLHNNEFNTEHEILFFSDETAAKEDTEKVYTSHCYCINLHFNEEN
Ga0272432_100041565F034416GAGMLIKYHDMFILAAKAIKIIKERSALIIIVNSDEKDSSVNELNSTATELYIELLSNHYFSDNDLYDDNDYKNNINFRLYDHN
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