Scaffold Ga0170819_13633887

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170819_13633887

Scaffold Ga0170819_13633887

Overview

Basic Information
Taxon OID	3300031469 Open in IMG/M
Scaffold ID	Ga0170819_13633887 Open in IMG/M
Source Dataset Name	Fir Spring Coassembly Site 11 - Champenoux / Amance forest
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	770
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	France: Champenoux
Coordinates	Lat. (^o)	48.7585	Long. (^o)	6.3578	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015633	Metagenome / Metatranscriptome	253	Y
F025132	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170819_136338872	F015633	N/A	MFACLFLPRVAAAQGEPPKKVTWKSVECAIVRFNDQAPNSWNIYHSEKKGILLVRLWKRYMLVKIQAEEVYDIDPQKITVHGDTAEWSYADIPEKPIEIVEWKERNVGSMQRVTFRFGKNGHVLELQIPLGLNREPIY
Ga0170819_136338873	F025132	N/A	LKGIVRGTRRLFVPSWRMGHRVERLAVDSDDYDRFRQGDAVNVGVAPGALGIPWFYGVYRRSNQDSRWPVQ

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