Scaffold Ga0170819_11777256

Overview

Basic Information

• Taxon OID: 3300031469
• Scaffold ID: Ga0170819_11777256
• Source Dataset Name: Fir Spring Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2968
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Champenoux
• Coordinates
  • Lat. (^o): 48.7585
  • Long. (^o): 6.3578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002396	Metagenome / Metatranscriptome	564	Y
F003157	Metagenome / Metatranscriptome	504	Y
F004392	Metagenome / Metatranscriptome	440	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0170819_117772562	F003157	AGGAGG	MFDPDANQKRDNTDLWGFTRFGGLDRLDWLMILISVLLGTIAKQHHVLDLPDWFLEWVSPFLLMAFGYKARRKITEVVESRRDRGKDTREE
Ga0170819_117772563	F002396	GAGG	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIILLEILLGLFFIGCALAARARLRIQARSQVMEGPEGSINAKAKWFDRYDVLMILTVIVIYSSMSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRKAEAHDGRPHMDAGEKQEIARKETVERCQ
Ga0170819_117772564	F004392	AGGA	MPVNGPETIADSKPSQPVPSEGRSVRAARNAKPAVGRGASARRRRDRQDSPETNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS