Scaffold Ga0170819_11649006

Overview

Basic Information

• Taxon OID: 3300031469
• Scaffold ID: Ga0170819_11649006
• Source Dataset Name: Fir Spring Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 800
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Champenoux
• Coordinates
  • Lat. (^o): 48.7585
  • Long. (^o): 6.3578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028591	Metagenome / Metatranscriptome	191	N
F078512	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0170819_116490061	F078512	N/A	SKEAGQLDGMPAYFIKLPEDQRLVIVKYKSSIFRISYGPNDHKPIDKTLDEIFNRMMSTVKFRK
Ga0170819_116490062	F028591	AGGAG	MKKIVYLTMLICLGSAFTKLYPNPAEKNFEGEWGSHKGLDFGIHLHQNGNSVTGYHSGATKDASRTDTAPDGEGPPSIAGTVKSDTAIVEVHSAYSDAVLKVHLTLHDHSLEWKVIQVKRHGENYIPDKATLYKEHFDQKKGWVRDHP