Scaffold Ga0272448_1027638

Overview

Basic Information

• Taxon OID: 3300031463
• Scaffold ID: Ga0272448_1027638
• Source Dataset Name: Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-019-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4863
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5676
  • Long. (^o): -110.8075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052337	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272448_10276385	F052337	GAGG	MSGMDQLWGQTRGLDDWTVDPVDLPKRRSGGRGRLSHPDIGTDTMSGMPIRNVQRPTFNSQLSKG
Ga0272448_10276386	F052337	GGA	MVGEIWGQTQNLDDRTFDLADLTRRRSDGPSRFWWPDKGTDTMSDIPIRNVQRETFNSQLLTG
Ga0272448_10276387	F052337	GGA	MVAAIWGQTQGLDDRTFDPVDLAKRRSEGPGRMWRPDKGTDTMSGMPIRNVQRPTFNAQLSTG