Scaffold Ga0272430_1026740

Overview

Basic Information

• Taxon OID: 3300031460
• Scaffold ID: Ga0272430_1026740
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4837
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.6
  • Long. (^o): 161.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020121	Metagenome	225	Y
F023763	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272430_10267404	F023763	N/A	MSFQNCLMLILMSRIECISLFKKIFXATCQSIXLIIDLVKMISDVIVESRQKLALMSLMTIQLLSXHKILKIFVICDHLDKIDKVFKLXSSFLESANNDHEFFIIDFVVTLNXVMLLXKVSDXMKNFILIILRKNVFEHIVXSIDFYHNLVIXIIMMKNNLESEDFLKSVECNLTFLRSDKEYIFSDEMSERDSYSTTIVIDKSFIEVREI
Ga0272430_10267406	F020121	GAG	MLIAQIIYEFNVNLFHRSYFKYFVEDEVXLNVCNLSIVHLAVKLNDHNVDFFKIKCIFKNNFLIIELNLSTFMKIHSIFHVILLSHIISDSLSSQHQKSQELVIIKNNERFXYVNSILNFKRDRCYNSSLLKYYVD