Scaffold Ga0272430_1019427

Overview

Basic Information

• Taxon OID: 3300031460
• Scaffold ID: Ga0272430_1019427
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6386
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.6
  • Long. (^o): 161.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F038009	Metagenome	166	Y
F080690	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272430_10194272	F038009	GAG	MIKVSSSQLNYVKLYKRLIELICLKNNKSSKKERISTLDFXXVFFLNDLKNITKSFLFQMRNKIERDLFLVNELSISXLLVNKXRVILLLVSKXETELLFASELRTELLLVSELKTELLLSSEXETRLLLASELKTELLLSNEXETKLLFASKLNAELLLVNNL
Ga0272430_10194273	F009580	N/A	MIEVRVKRLRLVDKIICIQISEHDLAQRLNFSCKQRDFFIYTDDVIVINVHDTQSEEFLIXAFFNNFVXMLQLAVVTQLSLVADFLDLKNDQSLILNDDNDKA
Ga0272430_10194274	F080690	N/A	MQKLQNQVRQYDVITSSSFIIFSSSIYIELNSQSLAMITQIITQILNNQFSFIIHFFANSVAVFITFRFKKLLDIFEYEKNKDWLNAXEQSLIQRMNVNDDHYLFHQVKIVYIKSRLIIDKKIHNLMNQYRVNNLCIIFIFADXXYKLHHCCNNSFKTENVHLYFREILKQDMNSFVDYYNLFYQKKECSLRKDFSLIDCLKRNVNYFIQIVIFF