Scaffold Ga0272430_1012575

Overview

Basic Information

• Taxon OID: 3300031460
• Scaffold ID: Ga0272430_1012575
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9283
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.6
  • Long. (^o): 161.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F021026	Metagenome	220	Y
F087979	Metagenome	109	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272430_10125751	F094625	N/A	LIESLVQSSLXHYERSTLSATFSYVEISSSYLLAQMKQSHRSSIDDKRAVEQFAQNVIENSVEIFRVMRELQNQVXQHDVIISFSFIVSSSSVYQELNSQSLAMITQIIAQILHNQSLLVVQVFANSIAVSTLIKFEKLFDISEYEKNKDXLNVXKQSLIQRMNINDDRYLFHQVKIVYVESXFIINKKIHNLMSQYRVNDLCIIFIFADX
Ga0272430_10125753	F009580	AGCAG	MIEVRMKRLRLVDKMICIQIFERDLAQRLDFFREQRDFFIYIDDVIVVDIHDTQSEELFIXAFFSDFAXMLQLAVVAQLSLIADFLDLRNDQNLILNDDNDET
Ga0272430_10125754	F021026	N/A	MIVFCILRQAQSRVLVLTLIDNEVSAYVFMNKFFTQQHHLLLHQLTHSRRLQEFDDQVALINDIIYIVEITMILDEHIEKLFFYVTELSQYLIIMNLSXLHHHIIDVNFEHNILILSFFFYFNHCCSFLIKIYDLNQ
Ga0272430_10125759	F087979	N/A	MKDKNEDSTFIYMNRAESRLNNSSIDLRLQKFAYMIEMIKTELLRLN