Scaffold Ga0272430_1012145

Overview

Basic Information

• Taxon OID: 3300031460
• Scaffold ID: Ga0272430_1012145
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9555
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.6
  • Long. (^o): 161.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018487	Metagenome	234	Y
F033649	Metagenome	176	Y
F079401	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272430_101214511	F033649	N/A	VYDNSKSRKKATCTLKALKQKEKSFTKHVIIFEQTLLKAEDLKXDDAVKKTFLSNSLNVMLTQALITTSISVSYNEYIILLQQVSHNLKSIQKAVTQECHIMITIITQQFYTDFMNXESTEHVSITTAKTEKKCRAQXVSEKKVTEHCTKQLCMQCEESEHFVKECKLLSVVQS
Ga0272430_10121454	F079401	AGAAG	MKXLLSLQCMHSCFIQHSVTFFSDTHCALCLSSVSVAVTMMCLMSSQFMLSVXDCCVMIIVVVQHSXITVFXIEFKLXLTHCSKIMYSSYDTEIEITIRAHMSVTSRLLLRNVFLTASSHFKSSAFSSVHLKMIRCLVNGFSFCFKAF
Ga0272430_10121455	F018487	GAG	MNSVFFIMSTLINKKSYAHTLYNTECLFYEIITSHFARNHNLQCIKIKPHTITEFDESSNSVVNEMTVI