Scaffold Ga0272430

Basic Information
Taxon OID	3300031460 Open in IMG/M
Scaffold ID	Ga0272430_1003829 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031460 Open in IMG/M

Scaffold ID

Ga0272430_1003829 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25887
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (23.26%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25887

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (23.26%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.6	Long. (^o)	161.1	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.6

Long. (^o)

161.1

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F048018	Metagenome	148	Y
F074204	Metagenome	119	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272430_100382918	F087980	N/A	MIENSVEIFRAMQELQNQVQQHDIIISFSFIVFNSSIYIKLNSQFLVMITQIITQILNNQSFFIIHFSANSVAVFIASRFKKLLNISEYERNKD
Ga0272430_100382919	F001951	N/A	MTKFKFIDSLRNKREKDEDTVKTTVTEMMIFELKELLVNAKMFLTLMNETMMKMKXD
Ga0272430_100382920	F009580	AGCAG	MIEVRMKRLKLVDKMIYIQISERDLTQKLNYSCKQQNFFIYTDDVIVVNVHDMQSEELFIXAFFNNFAXMLQLAVVAHLSFVADFLDFRNDQNLILNDDNDKV
Ga0272430_100382921	F074204	N/A	MIVFCILRQAQSKVLVLTLINSEVSAYVFMNKFFTQQHYFFLHQLIHSCRLXEFDDQVTLIDDIIHVIEITMILNKHLKRLFFYVIELSQYLIIMSLSXLHYHVIDVNFEHNILIFFLLL
Ga0272430_100382924	F048018	GAG	MIXRHSLFELSTYFLSXKYKXFSCSLHSTKEILLXCHASLXSASIIXAANLSLISTCFYNVXVKMLAESSSRFRMSXFSXNLIFLTLNSLISKFMKIKIYKDAEIIKNRCNXTESKVMICDXSFMTLMLKMLKMRFSTILKSKTXIFRIVXCXYXCQELNVFFSLKKFSEQCVKAFNLSSILLKX

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272430_1003829

Overview

Ecosystem & Geography

Associated Families

Sequences