Scaffold Ga0272430

Basic Information
Taxon OID	3300031460 Open in IMG/M
Scaffold ID	Ga0272430_1003199 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031460 Open in IMG/M

Scaffold ID

Ga0272430_1003199 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29214
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (14.29%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29214

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (14.29%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.6	Long. (^o)	161.1	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.6

Long. (^o)

161.1

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F021026	Metagenome	220	Y
F038009	Metagenome	166	Y
F080690	Metagenome	114	Y
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272430_100319912	F102179	N/A	MSVHSISENMSTCSAMHIRSMLLKIMILAVQETHLDKVHFLKDKISQFESTTSRSTDIETLIHRDHNVAEKQLNSVAETVDCKQLISCAIVKVLTIHETIYNFSSKFIVELIKILQCQRL
Ga0272430_10031995	F080690	N/A	LHNARASKSSVIISSSFIVLNSSVYIELNSQFLVMIAQIVAQILNNQSFLVVHLSANSVAVFIASRFEKLLDISEYEKNKDRLNAXKQSLIQRMNVNDDHYLSHRVKIVYLESRLIIDKKTHNLMSQYRVNDLCIIFIFADXXHKLHHCCDNSFKTEDAHLYLRETLKQDMNSFVDYYNLFYQKKECFLMKDFSLIDCLKRNVNYFTQVIIFFXRNLDETRSFIFHQXV
Ga0272430_10031996	F001951	GAG	MMTMTKFRFIDSSKDEKERDEDTVKTTVTEVMIFELKELLIDAEMFLTLMNETMTKTKRD
Ga0272430_10031997	F021026	N/A	MIIFCILRQAQSRVLTFALIDSEVFAYVFMNKFFAQQHYLFLHQLTHSRRLQEFDDQVALINDIIHVIEITMILDEHIERLFFYVIELSQYLIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHCCQTLVKIYDLNQQEENFSLEVNKVASLQSRSQFAHKKQLSSXITHKKQFRLQIAHKKQFSTQFACKKQFSFSFAXKK
Ga0272430_10031998	F038009	N/A	LIELICSRNNRSSKEERILTLDFXXVFFLNDLKNTIRSFLFQTRDKIERDLFLVNELSINXLLMSEREIILLLVSRXKTELLFSNEXRTRLLLASELKTELLLSSEXKTRLLLASELKTELLLSSEXETKLLLASELKTELLLSSEXETKLLLASELSAELLLVSNL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272430_1003199

Overview

Ecosystem & Geography

Associated Families

Sequences