Scaffold Ga0272430_1002612

Overview

Basic Information

• Taxon OID: 3300031460
• Scaffold ID: Ga0272430_1002612
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34084
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.6
  • Long. (^o): 161.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034417	Metagenome	174	Y
F042663	Metagenome	157	Y
F058564	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272430_100261222	F034417	AGGAGG	MTWAIVKPRDAWVRQAKEAWAALEPQAPQGAHLRDLAAIDHHNFALLIEALCALTPGQVSQELQDLAGLRPVGEVLGMPDWGNARIDAGDAGD
Ga0272430_100261223	F058564	AGGAGG	MTLIGYTLHGHPLCLLCVDGDYDRAADGLAHAHDGQGCAADVAPIHAGDPDDGAPCAGCGQPLAAPPEAGVVWTCPYCGNADLRVLYDERRACRVTTLNDTGDPADAEPWPSYAGDEFVDIDPGSFAFHCDACNIHNITPRKGGAINDLGHRQAA
Ga0272430_100261225	F042663	AGGA	MTPQAIPAPHVAASLPSIPPRSIVTLDDGDVSVTVTFRPCSPIGSTEVVTSLDGLDDTALLHLVDSAISRLSAYHAAYQHAMTEDAAPAPISAPLPLPVPWYAW