Scaffold Ga0307513_10004810

Overview

Basic Information

• Taxon OID: 3300031456
• Scaffold ID: Ga0307513_10004810
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17930
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024230	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307513_1000481013	F024230	AGG	MSPRVCHSTPLQAKRSADSFVYRFPEWNEAPDFSTFSSLLRITAKYQMPTVRSRILKVIRGAYPVTFEGLDPSKALGENVFNRPVPHPNAVLNLFVQQNLTSALPMAYYMAVRRGPDSLLDECLPASARLPPKTLRVAMKGLFVLREMELKETRRLIFGSKGSWSCSRPNCPSRNPTGPGFSEAHHEIADRIVDSVELHSGTKLLQVLSLREFCEGDGFGFCEGCVDAWEARHADVRKKAWAALPDVFGLKV
Ga0307513_1000481015	F024230	GGA	VPDFITFSSLLRITAKYQMSTVRSQILGVVRCAYPETSEGLDPSKALGENVFSGPTPHPNAVLNLFIQQNLTSALPLAYYMAVRRGPDSLLDECLPASARLAPKILRVAMKGLIVLREMELKETHNLILGPKGPHRSSPKCSSCDVVGPRVSEAHQKVIDQITNSSRFGTKLLQVLSLSDICGGDYHGFCESCVKEWEYGHAEVRKKAWTALPGVFGLGA
Ga0307513_1000481018	F024230	GGAG	VWQHPIPSPRQCLVIPLCCARSDVREIEACDRGITQWLSAHRVFGHGHGLCHTSQGHISPRVYYPSPLQVNSSVDSFVYRFPEWNEAPDFSTFSSLLRITAKYQMPTVRSRVLKVIRDAYPVTFEGLDPSKALGENVFSRPTPHPNAVLNLFVQQNLTSALPMAYYMAVRRGPGSLLDDRLPASARLPPKILQAAITGLFVLRGMELKETRRLIFGPKGSRYCSRPNCPSCYPPGQGFSEAHHKIADRIADSVELHSGTKLLQVLSLREICGDDGLGFCEGCVKAWEAGHADVRKKAWAALPDVFGLKV
Ga0307513_100048102	F024230	N/A	MTTKYQMPAVRSQILEVVRDAYPETFEGLDPSKTLGESVFSGPTPHPNTVLNLFVQQNLTSALPMAYYMAVRRGPESLMGRRLPTSARLPPETLQATIQGLFALREMELKETHRLIFGSNPPRSCLRQTCPSRNTTGPRASEAHQKMVDRLVDSANSGTKLLQVLSLREVCGGDSLGFCEGCVEAWEARHADVRKKAWVALPDVFGLKLRLELA
Ga0307513_100048107	F024230	N/A	MPAVRSQILEIIRDAYPVTFEGLDPSKVLGENVFSGPTPHPNAILNLFVQQRLISALPMAYYMAARRGLNSLMDRRLPRSATLSPEILQTAIRGLMEFREMELKATHNLIFGSKDSRSCSRPNCSSRNAAGPGVSEARQKIVDRIVGSVHSGTKLLQVLSLREVCGGDCLGFCEDCVRGWESGHAGVRKGAWVVLPYVFGLKG