Scaffold Ga0307513_10002961

Overview

Basic Information

• Taxon OID: 3300031456
• Scaffold ID: Ga0307513_10002961
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23179
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (43.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023009	Metagenome	211	Y
F045459	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307513_1000296113	F023009	N/A	MIVRETHTPKPEKPFEQRPTKTISIDEVLAELGTQEPYHQSYFYWINPENTVTLEDITALYQHQYGENFIYHTPSTKSNSIWFTQYPPSEQHSSQCFEIPIVCGGNKR
Ga0307513_1000296114	F045459	N/A	MVNLSVCASLIPDGVETTSGVSSSVYPLTTLATNYLALVLVEGSLTRWTEDGQSSLVGSVENSTCNCILYSGLPALHDLSSGSYL
Ga0307513_100029612	F045459	N/A	MATLSVCASVIPDGVETMSGVISSAPPLTTMVTNYLALVFVEGSLTRRTEDGESSLVSSVENSTFNRVLYSGLPALHDLSLGSYL
Ga0307513_1000296130	F045459	N/A	MVNLSVCASIIPEGVETTSGVSSSVYRLTTMATNYLALVLVEGSLTRWTEDGESSLVGSVENSTCNCMLYSGLPALHDLSSGSYL
Ga0307513_100029614	F045459	N/A	MVNLSVCASIIPDGVETTSGVSSSVYPLTTMATNCLALVLVEGSLTRWTEDGQSSLVGSVANSTCKCILYSGLPA