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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031456 Open in IMG/M |
| Scaffold ID | Ga0307513_10001558 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32886 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (34.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Morchellaceae → Morchella → Morchella sect. Distantes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Washington | |||||||
| Coordinates | Lat. (o) | 45.9233 | Long. (o) | -120.701 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014688 | Metagenome | 260 | Y |
| F023009 | Metagenome | 211 | Y |
| F045459 | Metagenome | 152 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307513_1000155829 | F023009 | N/A | MFGRDTDTPKPKKPFKSRPLRTISIDEVLTPIPELGTQEPFYKSYFWWINPGNTVTLEDIAALYEYQYGENFTYKTPSEKSNSICYTQYPESSQRTSQCFEIPIVWGGNKR |
| Ga0307513_1000155834 | F045459 | N/A | MVNLSVCAFIIPDGVETTSGVSSSVYRLTTMVMNYLALVLSEGSLTRWTEDGQSSLVGSVENSTCNCMLYSGLPALYDLSSGSYL |
| Ga0307513_1000155841 | F014688 | N/A | MLSEVQSKCRVRGSTELHERVSTMNRNKNPKEGRQACPRRGGKMA |
| Ga0307513_1000155843 | F014688 | N/A | MLSEVQSKWRVRGRTGLHEWVSTMNGNKNPKDGRHAALRRGGKMA |
| Ga0307513_100015588 | F023009 | GAG | MFGRDTHTPKPKKPFEPKPLRTISIDEVLTPIPELGTQAPYHESYFGWINPQNTVTLEDIAALYQYQYSKEFTYHTPSEKSNSIWYTQYPDIDLRSSQRFEMPDLWGGNKMISFPLKKP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |