Scaffold Ga0307513_10000766

Overview

Basic Information

• Taxon OID: 3300031456
• Scaffold ID: Ga0307513_10000766
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46438
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (52.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008927	Metagenome	325	Y
F012738	Metagenome	277	Y
F023009	Metagenome	211	Y
F045459	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307513_1000076636	F012738	N/A	MSCGRPTDKKLFAGYIRGVRVTASWGATSITPGNHLRAYFDLRVVVWLTVEGLGLTVEAARLPGQPPQSKSQATP
Ga0307513_1000076639	F023009	GAG	MFARDTQTSQPKKPFEPRPTRTTFIEEVLTTIPQVGTQEPYNESYFWWITPENTVTLEDIAALYQYQYGENFTYKSLSEKSNSISYTQYPESDQPSSQCFEIPIVWGGSKR
Ga0307513_1000076647	F008927	N/A	MKVVSMPSKWIWCIHRGEVGKRWSPREKAYRYDPEDKSYNAGRPEHIRQLQVEFSTEPTKEDWTSSVQRVRLPSVRTRAR
Ga0307513_1000076649	F045459	N/A	MVNLSVCASIIPEGVETTSGVRSSVYPLTTLVTNYLALVLVEGSLTRWTEDGHSSLVGSVENSVCTCISYSFLAALHDLSLGSYL